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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4875317_4875981_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4875317 - 4875981
Intron Length:
665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCCCGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGATGAG
U12 Branch Point Sequence:
CGGGGATGAGCG
Flanking Amino Acid:
REYLQKHAAGRFQCSQCLHK
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
41.2
-0.5
1.6
31.2
43.9
Major PPT
59.7
0.22
1
53.8
31
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
32.6
-1.4
2
29.76
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023211
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032950
4875171 - 4876754
1584