About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4895347_4895435_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4895347 - 4895435
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CCATCCCACCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTCAC
U12 Branch Point Sequence:
CTTGCTGTCACC
Flanking Amino Acid:
TGFDAHYTAVDVDECLEKSD
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
59.4
0.21
0.9
51.1
32.8
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
45
-0.4
2.4
60.93
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015691
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016367
4883158 - 4902955
19798