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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4895614_4900412_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4895614 - 4900412
Intron Length:
4799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
CAAGCACTAACC
Flanking Amino Acid:
SYLCEYDYVKIEAEDQELAT
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
82.1
0.72
0.8
76.1
32.5
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
45.6
-0.3
2
54.58
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015691
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016367
4883158 - 4902955
19798