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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4900639_4902628_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4900639 - 4902628
Intron Length:
1990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGAGTTTCATTT
Flanking Amino Acid:
MRYPLAWSLCA
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
75.6
0.58
1
65.7
45.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
41.8
-0.5
1.6
51.29
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015691
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016367
4883158 - 4902955
19798