About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4961025_4964764_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4961025 - 4964764
Intron Length:
3740

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGGCTGGA
5'SS Class:
major
3'SS Sequence:
TCACAAGCATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CTTCTCTTCACA
Flanking Amino Acid:
SPQPLGGSAPAEEPAPKPGR
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
62.1
39.5
Major BPS
77.5
0.68
1
79.6
33
Major PPT
56
0.14
1
52.3
41.3
Minor 5ss
20.4
-3.4
3.9
31.3
42.9
Minor BPS
60.8
0.33
1.8
72.02
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025648
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020566
4953311 - 4964828
11518