Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4968115_4968998_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4968115 - 4968998

Intron Length:

884

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCGT

U12 Branch Point Sequence:

CTTCTCCCCAAG

Flanking Amino Acid:

KSLAAAAGKQELAKYFLAEL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.8

72.1

31.2

Major BPS

31.8

-1.1

4.2

40.9

Major PPT

65.8

0.36

63.8

31.7

Minor 5ss

26.3

-2.7

3.1

33.4

Minor BPS

36.4

-1.2

2.1

42.65

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019657

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016542

4967902 - 4969136

1235