Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4977468_4978442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4977468 - 4978442

Intron Length:

975

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCAA

5'SS Class:

major

3'SS Sequence:

TTGGTCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

AGGTATTTATGC

Flanking Amino Acid:

NLASHKTVHTGEKPYRCNIC

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

41.4

Major BPS

88.7

0.96

0.8

36.5

Major PPT

79.7

0.67

0.9

73.8

36.9

Minor 5ss

-2.4

3.4

46.9

Minor BPS

43.7

-0.5

1.9

50.04

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045335

4975587 - 4982889

7303

ENSAPLT00000016563

4975898 - 4983946

8049