About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_4979870_4980421_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4979870 - 4980421
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTCCTTCCACA
Flanking Amino Acid:
QASRLNNIVNRSRDGSPRSS
Intron Amino Acid Position:
456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78
0.63
0.8
72.3
32.4
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
49.2
-0
2
65.91
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045335
4975587 - 4982889
7303
ENSAPLT00000016563
4975898 - 4983946
8049