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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_509632_526011_R

Intron Information:

Intron Rank:
144667
Intron Class:
major
Intron Phase:
Intron Coordinates:
509632 - 526011
Intron Length:
16380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
CACACTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
74.3
37
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
82.7
0.74
0.7
81.3
23.8
Minor 5ss
46.6
-0.4
2.8
66.3
44.7
Minor BPS
48
-0.1
1.6
51.26
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025190
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040336
508284 - 532184
23901