Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5167625_5260650_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5167625 - 5260650

Intron Length:

93026

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACGTAAA

5'SS Class:

major

3'SS Sequence:

TGCCTCTCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GTGCGATTGATC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.9

0.68

74.7

37.2

Major BPS

81.9

0.79

0.9

80.1

Major PPT

75.5

0.57

0.8

72.9

31.9

Minor 5ss

34.5

-1.8

2.9

42.3

44.6

Minor BPS

44.1

-0.4

52.88

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039621

5167519 - 5462208

294690