Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5206825_5237135_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5206825 - 5237135

Intron Length:

30311

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCCATCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

CGAAGGTTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

74.9

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

79.2

0.66

0.8

73.9

29.9

Minor 5ss

31.1

-2.2

3.1

31.2

42.7

Minor BPS

40.3

-0.8

2.3

41.22

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013339

5206725 - 5463093

256369