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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5237202_5260650_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5237202 - 5260650
Intron Length:
23449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GTGCGATTGATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.5
0.57
0.8
72.9
31.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
44.1
-0.4
2
52.88
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013339
5206725 - 5463093
256369