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Intron Name: Anas_platyrhynchos_platyrhynchos_9_5260853_5289789_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5260853 - 5289789

Intron Length:

28937

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTCTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

GTTCTCTTGATT

Flanking Amino Acid:

YNPYKQPGGDGDFLPPPPPP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.7

0.84

0.8

81.1

26.8

Major BPS

83.8

0.84

73.6

41.8

Major PPT

86.9

0.83

0.6

81.5

30.6

Minor 5ss

29.7

-2.3

2.6

30.1

36.9

Minor BPS

69.6

0.7

1.2

80.91

34.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012796

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039621

5167519 - 5462208

294690

ENSAPLT00000023312

5167519 - 5463093

295575

ENSAPLT00000013339

5206725 - 5463093

256369