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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_526216_532014_R

Intron Information:

Intron Rank:
144668
Intron Class:
major
Intron Phase:
Intron Coordinates:
526216 - 532014
Intron Length:
5799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
ATTTTGCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
84.3
29.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
81.7
0.71
0.8
73.2
37.3
Minor 5ss
42.7
-0.8
3
58.2
46.4
Minor BPS
52.3
0.07
2.3
74.04
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025190
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040336
508284 - 532184
23901