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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5308352_5345046_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5308352 - 5345046
Intron Length:
36695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCGCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATGC
Flanking Amino Acid:
SSPYKPRTQQGSGTTSSSAA
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.1
71.7
38.6
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
70.8
0.47
0.9
62.3
39.8
Minor 5ss
29.4
-2.4
2.9
36
40.7
Minor BPS
41
-0.7
2.2
50.27
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039621
5167519 - 5462208
294690
ENSAPLT00000023312
5167519 - 5463093
295575
ENSAPLT00000013339
5206725 - 5463093
256369