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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5417969_5457013_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5417969 - 5457013
Intron Length:
39045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GTTTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TACGTTTTATTT
Flanking Amino Acid:
KKAYCEPCYINTLEQCSVCA
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.9
0.83
0.8
81.4
35.2
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
49.1
0.02
1.6
63.49
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039621
5167519 - 5462208
294690
ENSAPLT00000023312
5167519 - 5463093
295575
ENSAPLT00000013339
5206725 - 5463093
256369