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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_54590_55776_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54590 - 55776
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTTTTCAATT
Flanking Amino Acid:
YTYGPGATTIYPAAGGSDDW
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
87.8
0.85
0.8
89
26.2
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
60.7
0.41
1.5
73.56
38.2

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022744
54238 - 80561
26324
ENSAPLT00000015506
54238 - 76917
22680
ENSAPLT00000038325
54238 - 128396
74159