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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5460060_5462079_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5460060 - 5462079
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGTTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTTACTT
Flanking Amino Acid:
DFHVQCYRCEDCGGLLSEGD
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
1
92
25
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.9
0.45
0.9
61.8
40
Minor 5ss
38
-1.4
2.8
51.9
44.6
Minor BPS
57.7
0.32
1.8
76.08
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012796
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023312
5167519 - 5463093
295575
ENSAPLT00000013339
5206725 - 5463093
256369
ENSAPLT00000039621
5167519 - 5462208
294690