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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5492523_5508892_F

Intron Information:

Intron Rank:
150545
Intron Class:
major
Intron Phase:
Intron Coordinates:
5492523 - 5508892
Intron Length:
16370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GGCCTATTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
72.4
0.5
1
66
40
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
49.1
-0.2
1.7
51.45
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030905
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034890
5492305 - 5510004
17700