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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_55862_63918_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55862 - 63918
Intron Length:
8057

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
GCTTCTACAAAT
Flanking Amino Acid:
YKYPENYEELNSIASAAAKQ
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
83.4
0.75
0.7
76.9
25.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
47.9
-0
1.9
67.38
43

Associated Gene:

Gene:
CPB1
Ensembl Gene ID:
ENSAPLG00000014834
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022744
54238 - 80561
26324
ENSAPLT00000015506
54238 - 76917
22680
ENSAPLT00000038325
54238 - 128396
74159