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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5627177_5627353_F

Intron Information:

Intron Rank:
145806
Intron Class:
major
Intron Phase:
Intron Coordinates:
5627177 - 5627353
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCACTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TATACATTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
64.1
0.32
1
68.6
31.1
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
66
0.59
1.7
82.71
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028572
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047245
5626832 - 5628172
1341