Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5692408_5723948_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5692408 - 5723948

Intron Length:

31541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGCCTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTAAC

U12 Branch Point Sequence:

GCTTCTGTAACA

Flanking Amino Acid:

QDTELSDPMWPQYTNLGLLN

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

74.1

38.4

Major BPS

62.2

0.3

1.2

38.7

Major PPT

75.4

0.57

0.9

66.9

40.5

Minor 5ss

29.2

-2.4

2.5

36.7

Minor BPS

60.1

0.31

71.5

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000012917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027370

5673258 - 5772985

99728