About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5724204_5753397_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5724204 - 5753397
Intron Length:
29194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCATTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ATGTCCTGACTC
Flanking Amino Acid:
SSTAKSATWTYSTELKKLYC
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
73.8
42.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
76.5
0.6
0.8
73.9
30
Minor 5ss
36.4
-1.5
3.3
49.5
46.5
Minor BPS
55
0.14
1.7
65.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012917
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028633
5706741 - 5772985
66245
ENSAPLT00000027370
5673258 - 5772985
99728
ENSAPLT00000013489
5695843 - 5772985
77143
ENSAPLT00000044255
5706741 - 5762898
56158