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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5755817_5756699_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5755817 - 5756699
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
CCTTTCTTCGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCTTCTTTCACC
Flanking Amino Acid:
ILIIVTLETRDGQVLGRRCF
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.2
36.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
84.2
0.77
0.7
79.7
25.6
Minor 5ss
39.6
-1.2
2.8
49.5
40.3
Minor BPS
69.4
0.59
1.7
77.59
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012917
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044255
5706741 - 5762898
56158
ENSAPLT00000028633
5706741 - 5772985
66245
ENSAPLT00000027370
5673258 - 5772985
99728
ENSAPLT00000013489
5695843 - 5772985
77143