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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5756837_5757594_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5756837 - 5757594
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GTGTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTTTGTCTAATG
Flanking Amino Acid:
STKNGDGTKRPFRQGTHGIQ
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
83.8
0.76
0.8
81.2
36.5
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
48
-0.2
2.1
59.17
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012917
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028633
5706741 - 5772985
66245
ENSAPLT00000027370
5673258 - 5772985
99728
ENSAPLT00000013489
5695843 - 5772985
77143
ENSAPLT00000044255
5706741 - 5762898
56158