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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5757678_5758615_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5757678 - 5758615
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CCCTGTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTTTTTCACT
Flanking Amino Acid:
SPDDELLYLPVRGRETYEML
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.2
0.36
1
57
42.5
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
66.4
0.6
1.7
83.79
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012917
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044255
5706741 - 5762898
56158
ENSAPLT00000028633
5706741 - 5772985
66245
ENSAPLT00000027370
5673258 - 5772985
99728
ENSAPLT00000013489
5695843 - 5772985
77143