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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5758753_5762783_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5758753 - 5762783
Intron Length:
4031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCCTTCTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCCTTCTCTACA
Flanking Amino Acid:
QQQHQHLLQKHLLSACFRSE
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
85.2
0.79
0.7
79.7
25.9
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
49.9
-0
1.9
62.72
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012917
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044255
5706741 - 5762898
56158