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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5789020_5789843_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5789020 - 5789843
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCTAT
U12 Branch Point Sequence:
TTTTCTTTCCTT
Flanking Amino Acid:
FTLDPLYRELERIQADAAPQ
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
48.5
-0
1.4
47.8
45.7
Major PPT
78.9
0.65
0.8
72.7
32.1
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
46.1
-0.2
3.6
82.98
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412