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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5789985_5790744_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5789985 - 5790744
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TATTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CCTTGCCTATTT
Flanking Amino Acid:
FTEMDAKTVTASIKPKCGRM
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
60
46.2
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
87
0.83
0.7
81.9
29.7
Minor 5ss
28.7
-2.4
2.8
33.1
41.8
Minor BPS
44.5
-0.3
2.3
63.76
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412