Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5790821_5791175_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5790821 - 5791175

Intron Length:

355

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAGG

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTCCCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCACAG

U12 Branch Point Sequence:

GCCACCACCACA

Flanking Amino Acid:

EPPAYTFRDYSALLYMNADF

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

66.4

45.1

Major BPS

-0.4

1.4

48.6

36.6

Major PPT

84.4

0.77

0.7

77.3

31.5

Minor 5ss

31.5

-2.1

3.1

39.9

45.7

Minor BPS

39.8

-0.8

2.1

46.01

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013236

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013810

5778133 - 5852544

74412