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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5791953_5792034_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5791953 - 5792034
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGCTC
5'SS Class:
major
3'SS Sequence:
TGTCCCTGCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACCC
Flanking Amino Acid:
EGATVLKALKYGYEGRVPLK
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
61.2
40.4
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
69.5
0.44
1
61.4
40
Minor 5ss
33.3
-1.9
3.7
49.6
47
Minor BPS
43.7
-0.5
2.1
51.46
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412