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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5796027_5796140_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5796027 - 5796140
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATGAT
U12 Branch Point Sequence:
AAGTCATGATGT
Flanking Amino Acid:
KRYGARQDEHSVPSSISNEP
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
72.1
0.55
1.1
62
44.2
Major PPT
79.5
0.66
0.8
77
31.7
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
42.1
-0.5
2.1
57.88
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412