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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5796182_5796648_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5796182 - 5796648
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAATACCT
5'SS Class:
major
3'SS Sequence:
CCTTTTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAAAACTCAACC
Flanking Amino Acid:
AGLGFAYTEPNYWKRYGARQ
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
62.2
42.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81.2
0.7
0.7
75.9
26.3
Minor 5ss
35.2
-1.7
3.2
50.9
44.9
Minor BPS
48.9
-0.1
1.7
57.97
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412