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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5798184_5798966_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5798184 - 5798966
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GCCTCCTAAAAA
Flanking Amino Acid:
YDYLQFAYYRVGDYVKALEC
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
75.3
0.57
0.9
65.9
40.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
53.7
0.11
1.8
61
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412