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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5802056_5802755_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5802056 - 5802755
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCGGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
GCCTGCTTAAAG
Flanking Amino Acid:
LIDREAKPHMEDYTAGVRHY
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
69
0.43
1
60.7
40.3
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
49.5
-0.1
2
52.97
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412