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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5802903_5852088_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5802903 - 5852088
Intron Length:
49186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
TATCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATCT
Flanking Amino Acid:
YSYLQRAYIQLNQLEEAANA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.2
0.73
0.9
76.8
37
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
73.5
0.82
1.5
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013236
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013810
5778133 - 5852544
74412