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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5891551_5892001_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5891551 - 5892001
Intron Length:
451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGACT
5'SS Class:
major
3'SS Sequence:
TGTTTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TTACCTGTAACA
Flanking Amino Acid:
FYDPFTPVNTRFEFGSALFI
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
69.6
40.7
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
81.4
0.71
0.8
73.7
36.9
Minor 5ss
33.2
-1.9
3.5
49.6
46.4
Minor BPS
58.9
0.27
2
73.6
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013457
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014024
5891297 - 5900596
9300