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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5892087_5892309_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5892087 - 5892309
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAC
5'SS Class:
major
3'SS Sequence:
CCTTCACATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTCCCTTCACA
Flanking Amino Acid:
VFGGVIFIIAGLSALVATSW
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
73.5
37.5
Major BPS
80
0.75
1
78.6
31
Major PPT
72.8
0.51
0.9
66.5
33.5
Minor 5ss
31
-2.2
2.8
36.5
40.6
Minor BPS
68.2
0.57
1.8
77.93
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013457
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014024
5891297 - 5900596
9300