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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5934036_5934695_F

Intron Information:

Intron Rank:
139635
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
5934036 - 5934695
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGATTTTT
5'SS Class:
major
3'SS Sequence:
CCACCACAATCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
76.8
34.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.3
0.12
1
52.3
35.7
Minor 5ss
40.3
-1.1
3
50
46.3
Minor BPS
62.6
0.37
1.8
78.69
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025058
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040340
5933473 - 5935494
2022