Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5963194_5970875_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5963194 - 5970875

Intron Length:

7682

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTACC

5'SS Class:

strong_major

3'SS Sequence:

ACTGTGTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTTAT

U12 Branch Point Sequence:

ATAACCAGAACC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

80.6

31.9

Major BPS

63.6

0.34

1.4

57.4

49.1

Major PPT

66.4

0.37

1.1

61.4

Minor 5ss

43.1

-0.8

2.4

55.1

42.2

Minor BPS

51.2

0.02

1.8

65.28

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041609

5963028 - 5985266

22239