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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5977936_5980553_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5977936 - 5980553
Intron Length:
2618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
AGCTCAGGCACC
Flanking Amino Acid:
PTRFKPCQCSERCDDWGVDT
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.3
37.4
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
82.3
0.73
0.8
76.5
32.1
Minor 5ss
39.8
-1.1
2.8
47
42.5
Minor BPS
36.7
-1
2.4
47.51
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032051
5977893 - 5985266
7374