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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5978757_5980529_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5978757 - 5980529
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCAGGGTGA
5'SS Class:
weak_major
3'SS Sequence:
CGTGCAAGCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTTCCTGGAGA
Flanking Amino Acid:
TGSSWPSPWWCTLFFLLAER
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.5
0.13
1.4
48.7
40
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
56
0.14
1
51.3
41.8
Minor 5ss
26.4
-2.7
4.3
37
47.6
Minor BPS
64.8
0.46
1.8
79.36
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019416
5978714 - 5992499
13786