About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5980840_5981584_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5980840 - 5981584
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTCATTTAATC
Flanking Amino Acid:
NDTGNYTCMLRNTTYCSKVA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
72.7
44.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.9
0.47
0.8
68.8
31.7
Minor 5ss
34.5
-1.8
3.3
50
46.3
Minor BPS
61.8
0.35
1.5
68.44
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019416
5978714 - 5992499
13786
ENSAPLT00000036073
5980091 - 5999067
18977
ENSAPLT00000039973
5977377 - 5999067
21691
ENSAPLT00000032051
5977893 - 5985266
7374
ENSAPLT00000038912
5962279 - 5985266
22988
ENSAPLT00000027123
5977812 - 5984807
6996
ENSAPLT00000037271
5969584 - 5985266
15683
ENSAPLT00000026597
5969584 - 6072168
102585
ENSAPLT00000036736
5968125 - 5985266
17142
ENSAPLT00000041609
5963028 - 5985266
22239