About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5981778_5983465_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5981778 - 5983465
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TTCTGCTTGACT
Flanking Amino Acid:
SVTPTVKWYQTCKLVDGFNN
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
68.3
0.41
0.9
59.3
41.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
71
0.74
1.8
87.07
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032051
5977893 - 5985266
7374
ENSAPLT00000039973
5977377 - 5999067
21691
ENSAPLT00000027123
5977812 - 5984807
6996
ENSAPLT00000038912
5962279 - 5985266
22988
ENSAPLT00000026597
5969584 - 6072168
102585
ENSAPLT00000037271
5969584 - 5985266
15683
ENSAPLT00000019416
5978714 - 5992499
13786
ENSAPLT00000036736
5968125 - 5985266
17142
ENSAPLT00000041609
5963028 - 5985266
22239