Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5981778_5983474_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

5981778 - 5983474

Intron Length:

1697

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

CTAGACCTGCAAG|T

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

CACAAAT

U12 Branch Point Sequence:

TTCTGCTTGACT

Flanking Amino Acid:

SVTPTVKWYQLVDGFNNRYP

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

35.3

Major BPS

57.1

0.18

62.9

30.6

Major PPT

49.3

-0

1.2

45.4

41.2

Minor 5ss

33.8

-1.8

2.9

43.7

43.6

Minor BPS

0.74

1.8

87.07

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036073

5980091 - 5999067

18977