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Intron Name: Anas_platyrhynchos_platyrhynchos_9_5983632_5984580_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5983632 - 5984580

Intron Length:

949

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGAATG

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAT

U12 Branch Point Sequence:

TTCTCTCCCACA

Flanking Amino Acid:

LTRTVMMKVVGSPNKALPPQ

Intron Amino Acid Position:

238

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

75.5

40.6

Major BPS

78.8

0.71

67.6

40.6

Major PPT

81.5

0.71

0.7

76.3

25.9

Minor 5ss

36.6

-1.5

41.4

44.7

Minor BPS

45.6

-0.3

2.2

63.87

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016792

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027123

5977812 - 5984807

6996

ENSAPLT00000037271

5969584 - 5985266

15683

ENSAPLT00000026597

5969584 - 6072168

102585

ENSAPLT00000036736

5968125 - 5985266

17142

ENSAPLT00000041609

5963028 - 5985266

22239

ENSAPLT00000019416

5978714 - 5992499

13786

ENSAPLT00000036073

5980091 - 5999067

18977

ENSAPLT00000039973

5977377 - 5999067

21691

ENSAPLT00000032051

5977893 - 5985266

7374

ENSAPLT00000038912

5962279 - 5985266

22988