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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_5984653_6071887_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5984653 - 6071887
Intron Length:
87235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGAAGGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CCTACCTGAAGG
Flanking Amino Acid:
NEKVIYELEAGTDLVKETLQ
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75.6
35.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
49.3
-0
1.2
41.6
42
Minor 5ss
39.9
-1.1
2.9
53
44.2
Minor BPS
48.3
-0.2
1.9
52.64
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016792
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026597
5969584 - 6072168
102585