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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6046078_6047054_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6046078 - 6047054
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
ATCCCCACGACC
Flanking Amino Acid:
MSGGRPCPQPD
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
84.8
0.78
0.7
80.7
24.4
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
47.1
-0.2
1.8
59.32
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014067
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014649
6042359 - 6047057
4699