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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6059499_6091861_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6059499 - 6091861
Intron Length:
32363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCCC
5'SS Class:
major
3'SS Sequence:
ATTTCATTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATCTTACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
63.2
41.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.2
0.54
1
69.7
40.1
Minor 5ss
33.8
-1.8
3.1
45.5
42.5
Minor BPS
70.7
0.73
1.6
88.22
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031197
6058688 - 6144147
85460