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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_6091949_6138117_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6091949 - 6138117
Intron Length:
46169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GAGCCTCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
51.1
0.03
1.7
59.83
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014096
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031197
6058688 - 6144147
85460